EST Database of the Medaka, Oryzias latipes
  Library Retrieval
  BLAST Sequence Similarity Searching
Information on the Medaka EST Project
  Information on the cDNA libraries from which ESTs were derived.
  Contributors
Typing Data   Information   
Primers infomation of STS markers     
LG1 (Kondo et al. 2000)
LG12 (Fukamachi et al. 2001)
Search
Locus Name Search :  
BAC Database of the Medaka, Oryzias latipes
  BLAST Sequence Similarity Searching


Mb_base


BAC Database of the Medaka, Oryzlas latipes
Instruction:
1, Entry name:
Ex) MdF0001A01
Md : Suffix for medaka strain Md: HdrR, Mn: HNI
F or R : Sequence direction from pBACLAC vector.
0001 : Plate name of BAC clone
A01 : Clone position in 384 multi titer plate.

2, Quality assessment of BAC end sequences
The BAC end sequences were evaluated by PHRED and removed low quality sequence and vector sequence.

3, Reference
Nanda I, Kondo M, Hornung U, Asakawa S, Winkler C, Shimizu A, Shan Z, Haaf T, Shimizu N, Shima A, Schmid M, Schartl M.
A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes.
Proc Natl Acad Sci U S A.;99(18):11778-83 (2002).

Matsuda M, Kawato N, Asakawa S, Shimizu N, Nagahama Y, Hamaguchi S, Sakaizumi M, Hori H.
Construction of a BAC library derived from the inbred Hd-rR strain of the teleost fish, Oryzias latipes.
Genes Genet Syst. 76(1):61-63 (2001).


Links



for any question and clone request, email to mbase@k.u-tokyo.ac.jp

Illustration by Seita Miyazawa (University of Tokyo) and Photo by Akihiro Shima
Copyright (C) 2000-2002 All rights reserved, the Medaka Genome Database working Group (Hiroshi Mitani, Kiyoshi Naruse et al,)
This database is supported by Grant-in-Aid for and by a Grant-in-Aid for Scientific Research of Priority Area (11236203 ) from the Ministry of Education, Science, Sports and Culture, Japan
This database is based on the DYNACLUST system developed by DYNACOM Co., Ltd.